Add zsh function to run git commands for codebase diagnose

For using named plugins with neovim < 0.10 plugin versions not above a
certain value are needed.

.Xdefaults

@@ -4,7 +4,7 @@ URxvt.foreground: white
 !URxvt.borderColor: dark grey
 URxvt.scrollBar: false
 URxvt.cursorColor: green
-URxvt.font: xft:monospace:size=9,xft:Noto Color Emoji
+URxvt.font: xft:Jet Brains Mono Nerd Font:size=9,xft:monospace:size=9,xft:Noto Color Emoji
 URxvt.perl-ext-common: default,matcher
 URxvt.url-launcher: /usr/bin/xdg-open
 URxvt.matcher.button: 1

.config/alacritty/alacritty.toml

@@ -2,9 +2,18 @@
 cursor = "#00ff00"
 text = "#000000"
 
+[env]
+# set this to have true color when using nvim etc. in remote tmux session
+TERM = "xterm-256color"
+WINIT_X11_SCALE_FACTOR = "1.0"
+
 [font]
 size = 9
 
+[font.normal]
+family = "Jet Brains Mono Nerd Font"
+#family = "Mononoki Nerd Font"
+
 [general]
 # https://github.com/alacritty/alacritty-theme
 import = ["~/.config/alacritty/themes/themes/gruvbox_dark.toml"]

.config/nvim/init.lua

@@ -1,18 +1,32 @@
+-- utilities functions
+--require("utils")
+
 require("config.remap")
 require("config.set")
+require("config.commands")
+-- env vars used only for neovim
+require("config.env")
+-- configurations for various filetypes
+require("config.filetypes")
 
 -- plugin manager
 require("config.lazy")
 
 -- plugins
 require("config.cmp")
-require("config.gen-private")
 require("config.lsp")
 require("config.mason")
 require("config.treesitter")
+require("config.treesitter-context")
 require("config.gitsigns")
 require("config.lualine")
 require("config.telescope")
+require("config.indentline")
+--require("config.redmine")
+require("config.diffview")
+require("config.dap")
+require("config.parrot")
+--require("config.gitea")
 
 -- for some reason this must be placed in init.lua file
 -- it doesn't work in any lua/config/*.lua files

.config/nvim/lua/config/cmp.lua

@@ -24,4 +24,10 @@ cmp.setup({
       vim.snippet.expand(args.body)
     end,
   },
+  -- switch on rounded borders in floating completion windows
+  -- additionally vim.o.winborder = 'rounded' must be set (set.lua)
+  window = {
+    completion = cmp.config.window.bordered(),
+    documentation = cmp.config.window.bordered(),
+  },
 })

.config/nvim/lua/config/commands.lua

@@ -0,0 +1,3 @@
+vim.api.nvim_create_user_command('JQ', function()
+	vim.cmd('%!jq .')
+end, {})

.config/nvim/lua/config/diffview.lua

@@ -0,0 +1,2 @@
+require("diffview").setup({
+})

.config/nvim/lua/config/env.lua

@@ -0,0 +1 @@
+vim.env.LLM_KEY = "None"

.config/nvim/lua/config/filetypes.lua

@@ -0,0 +1,67 @@
+vim.api.nvim_create_autocmd('Filetype', {
+    pattern = {
+		'xml',
+		'html',
+		'xhtml',
+		'css',
+		'scss',
+		'javascript',
+		'typescript',
+		'lua',
+		'jsx',
+		'tsx',
+		'typescriptreact',
+		'javascriptreact',
+		'htmldjango'
+	},
+    command = 'setlocal shiftwidth=4 tabstop=4 expandtab'
+})
+vim.api.nvim_create_autocmd('Filetype', {
+    pattern = { 'yaml',
+	},
+    command = 'setlocal shiftwidth=2 tabstop=2 expandtab'
+})
+if vim.filetype then
+  vim.filetype.add({
+    pattern = {
+      [".*/defaults/.*%.ya?ml"] = "yaml.ansible",
+      [".*/host_vars/.*%.ya?ml"] = "yaml.ansible",
+      [".*/group_vars/.*%.ya?ml"] = "yaml.ansible",
+      [".*/group_vars/.*/.*%.ya?ml"] = "yaml.ansible",
+      [".*/playbook.*%.ya?ml"] = "yaml.ansible",
+      [".*/playbooks/.*%.ya?ml"] = "yaml.ansible",
+      [".*/roles/.*/tasks/.*%.ya?ml"] = "yaml.ansible",
+      [".*/roles/.*/handlers/.*%.ya?ml"] = "yaml.ansible",
+      [".*/tasks/.*%.ya?ml"] = "yaml.ansible",
+      [".*/molecule/.*%.ya?ml"] = "yaml.ansible",
+    },
+  })
+else
+  vim.api.nvim_create_autocmd({ "BufRead", "BufNewFile" }, {
+    pattern = {
+      "*/defaults/*.yml",
+      "*/defaults/*.yaml",
+      "*/host_vars/*.yml",
+      "*/host_vars/*.yaml",
+      "*/group_vars/*.yml",
+      "*/group_vars/*.yaml",
+      "*/group_vars/*/*.yml",
+      "*/group_vars/*/*.yaml",
+      "*/playbook*.yml",
+      "*/playbook*.yaml",
+      "*/playbooks/*.yml",
+      "*/playbooks/*.yaml",
+      "*/roles/*/tasks/*.yml",
+      "*/roles/*/tasks/*.yaml",
+      "*/roles/*/handlers/*.yml",
+      "*/roles/*/handlers/*.yaml",
+      "*/tasks/*.yml",
+      "*/tasks/*.yaml",
+      "*/molecule/*.yml",
+      "*/molecule/*.yaml",
+    },
+    callback = function()
+      vim.bo.filetype = "yaml.ansible"
+    end,
+  })
+end

.config/nvim/lua/config/gen-private.lua

@@ -1,5 +1,11 @@
+-- return {
+--     model = "llama3.2",
+--     host = "jupiter",
+--     port = "11434",
+-- }
 return {
-    model = "llama3.2",
-    host = "foo",
-    port = "11343",
+    model = "llama3.3",
+    host = "owu-zegv-api.med.tu-dresden.de",
+    port = "443",
+    https = true,
 }

.config/nvim/lua/config/gitsigns.lua

@@ -1,3 +1,11 @@
 require('gitsigns').setup()
 local gitsigns = require('gitsigns')
 vim.keymap.set('n', '<leader>gm', gitsigns.blame_line, { desc = 'Show git message for current line' })
+vim.keymap.set('n', '<leader>gd', ':Gitsigns diffthis ~ vertical=true<CR>:wincmd w<CR>', { desc = 'Show diff for current line' })
+vim.keymap.set('n', '<leader>gs', gitsigns.stage_hunk, { desc = 'Stage current hunk' })
+vim.keymap.set('n', '<leader>gS', gitsigns.stage_buffer, { desc = 'Stage current buffer' })
+vim.keymap.set('n', '<leader>gr', gitsigns.reset_hunk, { desc = 'Reset current hunk' })
+vim.keymap.set('n', '<leader>gR', gitsigns.reset_buffer, { desc = 'Reset current buffer' })
+vim.keymap.set('n', '<leader>h', gitsigns.next_hunk, { desc = 'Move to next hunk' })
+vim.keymap.set('n', '<leader>H', gitsigns.prev_hunk, { desc = 'Move to previous hunk' })
+vim.keymap.set('n', '<leader>ph', gitsigns.preview_hunk, { desc = 'Preview hunk in popup' })

.config/nvim/lua/config/indentline.lua

@@ -0,0 +1,3 @@
+require'indentmini'.setup()
+vim.cmd.highlight('IndentLine guifg=#444444')
+vim.cmd.highlight('IndentLineCurrent guifg=#557755')

.config/nvim/lua/config/lazy.lua

@@ -33,6 +33,10 @@ require("lazy").setup({
     install = { colorscheme = { "habamax" } },
     -- automatically check for plugin updates
     checker = { enabled = true },
+    change_detection = { enabled = false }, -- active change detection seems to eat up memory over time https://github.com/folke/lazy.nvim/issues/1008
+    ui = {
+	border = "rounded",
+    },
 })
 
 -- Open lazy menu with :Lazy check

.config/nvim/lua/config/lsp.lua

@@ -11,6 +11,8 @@ lspconfig_defaults.capabilities = vim.tbl_deep_extend(
     require('cmp_nvim_lsp').default_capabilities()
 )
 
+require'lspconfig'.ts_ls.setup{}
+
 -- This is where you enable features that only work
 -- if there is a language server active in the file
 vim.api.nvim_create_autocmd('LspAttach', {
@@ -30,3 +32,10 @@ vim.api.nvim_create_autocmd('LspAttach', {
         vim.keymap.set('n', '<F4>', '<cmd>lua vim.lsp.buf.code_action()<cr>', opts)
     end,
 })
+
+-- helper plugin configuration
+require'py_lsp'.setup{
+    host_python = '/usr/bin/python3',
+    default_venv_name = "venv",
+    language_server = "pylsp",
+}

.config/nvim/lua/config/lualine.lua

@@ -1,2 +1,11 @@
 -- https://github.com/nvim-lualine/lualine.nvim
-require('lualine').setup()
+require('lualine').setup{
+  sections = {
+    lualine_c = {
+      {
+        'filename',
+	path = 1
+      }
+    }
+  }
+}

.config/nvim/lua/config/remap.lua

@@ -14,3 +14,12 @@ vim.keymap.set("n", "<Up>", ":resize -1<CR>")
 vim.keymap.set("n", "<Down>", ":resize +1<CR>")
 vim.keymap.set("n", "<Left>", ":vertical resize -1<CR>")
 vim.keymap.set("n", "<Right>", ":vertical resize +1<CR>")
+
+-- prompt user for command, run it and put it's output at cursor position
+local function run_and_paste()
+	local out_raw = vim.fn.system(vim.fn.input('Command: '))
+	local out = string.gsub(out_raw, "\n", "")
+	local row, col = unpack(vim.api.nvim_win_get_cursor(0))
+	vim.api.nvim_buf_set_text(0, row - 1, col, row - 1, col, { out })
+end
+vim.keymap.set("n", "<C-c>", run_and_paste)

.config/nvim/lua/config/set.lua

@@ -11,3 +11,12 @@ vim.opt.incsearch = true
 
 vim.opt.signcolumn = "yes"
 
+vim.o.termguicolors = true
+
+vim.diagnostic.config({
+    virtual_text = true,
+})
+
+vim.opt.undofile = true
+
+vim.o.winborder = 'rounded'

.config/nvim/lua/config/telescope.lua

@@ -4,3 +4,29 @@ vim.keymap.set('n', '<leader>fg', builtin.live_grep, { desc = 'Telescope live gr
 vim.keymap.set('n', '<leader>fb', builtin.buffers, { desc = 'Telescope buffers' })
 vim.keymap.set('n', '<leader>fh', builtin.help_tags, { desc = 'Telescope help tags' })
 vim.keymap.set('n', '<leader>ft', builtin.treesitter, { desc = 'Telescope treesitter picker' })
+-- find selected text in visual mode with Ctrl-f via telescope:
+vim.keymap.set('v', '<C-f>', 'y<ESC>:Telescope live_grep default_text=<C-r>0<CR>', default_opts)
+
+-- grep hidden files as well
+local telescopeConfig = require("telescope.config")
+local vimgrep_arguments = { unpack(telescopeConfig.values.vimgrep_arguments) }
+-- I want to search in hidden/dot files.
+table.insert(vimgrep_arguments, "--hidden")
+-- I don't want to search in the `.git` directory.
+table.insert(vimgrep_arguments, "--glob")
+table.insert(vimgrep_arguments, "!**/.git/*")
+
+require('telescope').setup({
+    defaults = {
+        vimgrep_arguments = vimgrep_arguments,
+        layout_strategy = 'vertical',
+        layout_config = {
+            vertical = { width = 0.95 }
+        },
+    },
+    pickers = {
+        find_files = {
+            find_command = { "rg", "--files", "--hidden", "--glob", "!**/.git/*" },
+        },
+    },
+})

.config/nvim/lua/config/treesitter-context.lua

@@ -0,0 +1,3 @@
+require'treesitter-context'.setup{
+    enable = true,
+}

.config/nvim/lua/config/treesitter.lua

@@ -1,6 +1,6 @@
 require'nvim-treesitter.configs'.setup {
     -- A list of parser names, or "all" (the listed parsers MUST always be installed)
-    ensure_installed = { "c", "lua", "vim", "vimdoc", "query", "markdown", "markdown_inline", "python", "javascript", "css", "html", "yaml", "java", "bash", "csv", "dockerfile", "htmldjango", "json", "nginx" },
+    ensure_installed = { "c", "lua", "vim", "vimdoc", "query", "markdown", "markdown_inline", "python", "javascript", "css", "html", "yaml", "java", "bash", "csv", "dockerfile", "htmldjango", "json", "nginx", "latex" },
 
     -- Install parsers synchronously (only applied to `ensure_installed`)
     sync_install = false,
@@ -34,4 +34,9 @@ require'nvim-treesitter.configs'.setup {
         -- Instead of true it can also be a list of languages
         additional_vim_regex_highlighting = false,
     },
+
+    -- indent with treesitter is currently experimental, just mark text and hit "="
+    indent = {
+        enable = true,
+    },
 }

.config/nvim/lua/plugins/csv.lua

@@ -0,0 +1,19 @@
+return {
+    'cameron-wags/rainbow_csv.nvim',
+    config = true,
+    ft = {
+        'csv',
+        'tsv',
+        'csv_semicolon',
+        'csv_whitespace',
+        'csv_pipe',
+        'rfc_csv',
+        'rfc_semicolon'
+    },
+    cmd = {
+        'RainbowDelim',
+        'RainbowDelimSimple',
+        'RainbowDelimQuoted',
+        'RainbowMultiDelim'
+    }
+}

.config/nvim/lua/plugins/diffview.lua

@@ -0,0 +1,3 @@
+return {
+    "sindrets/diffview.nvim"
+}

.config/nvim/lua/plugins/gen.lua

@@ -1,13 +0,0 @@
-local ok, vars = pcall(require, 'config.gen-private')
-if not ok then
-  print("Missing gen-private configuration file.")
-end
-
-return {
-    { "David-Kunz/gen.nvim",
-      opts = {
-	      model = vars["model"],
-	      host = vars["host"],
-	      port = vars["port"],
-      }},
-}

.config/nvim/lua/plugins/gitsigns.lua

@@ -1,3 +1,3 @@
 return {
-    {'lewis6991/gitsigns.nvim'}
+    {'lewis6991/gitsigns.nvim', version='^1.0.2'}
 }

.config/nvim/lua/plugins/indentline.lua

@@ -0,0 +1,3 @@
+return {
+    "nvimdev/indentmini.nvim",
+}

.config/nvim/lua/plugins/lsp.lua

@@ -1,5 +1,7 @@
 return {
-    {'neovim/nvim-lspconfig'},
+    {'neovim/nvim-lspconfig', tag = 'v1.7.0'},  -- pin to a version thats compatible with nvim < 0.10
     {'hrsh7th/cmp-nvim-lsp'},
     {'hrsh7th/nvim-cmp'},
+    -- helper plugins
+    {'HallerPatrick/py_lsp.nvim'},
 }

.config/nvim/lua/plugins/mason.lua

@@ -1,6 +1,7 @@
 return {
+    -- pin version due to https://github.com/mason-org/mason.nvim/issues/1929
     -- mason for downloading language servers
-    {'williamboman/mason.nvim'},
+    {'williamboman/mason.nvim', version = "^1.0.0"},
     -- mason-lspconfig to configure auto setup of language servers
-    {'williamboman/mason-lspconfig.nvim'},
+    {'williamboman/mason-lspconfig.nvim', version = "^1.0.0"},
 }

.config/nvim/lua/plugins/parrot.lua

@@ -0,0 +1,4 @@
+return {
+  "frankroeder/parrot.nvim",
+  dependencies = { "ibhagwan/fzf-lua", "nvim-lua/plenary.nvim" },
+}

.config/nvim/lua/plugins/redmine.lua

@@ -0,0 +1,6 @@
+return {
+    "sgross-emlix/angerona.nvim",
+    dependencies = {
+    	"nvim-lua/plenary.nvim",
+    },
+}

.config/nvim/lua/plugins/treesitter-context.lua

@@ -0,0 +1,4 @@
+return {
+    {'nvim-treesitter/nvim-treesitter-context',
+    },
+}

.config/nvim/lua/plugins/treesitter.lua

@@ -1,5 +1,6 @@
 return {
-    {'nvim-treesitter/nvim-treesitter'}
+    {'nvim-treesitter/nvim-treesitter',
+    tag = 'v0.9.3'},  -- pin to a version that works with nvim < 0.10
     -- configure parsers via config/treesitter.lua
     -- update parsers with :TSUpdate
 }

.config/ranger/scope.sh

@@ -87,6 +87,12 @@ handle_extension() {
             pandoc -s -t markdown -- "${FILE_PATH}" && exit 5
             exit 1;;
 
+	## DOCX
+	docx)
+	    ## Uses: https://github.com/bgreenwell/doxx
+	    doxx "${FILE_PATH}" && exit 5
+	    exit 1;;
+
         ## XLSX
         xlsx)
             ## Preview as csv conversion

.tmux.conf

@@ -3,6 +3,11 @@ set -g default-shell /usr/bin/zsh
 set-window-option -g window-active-style bg=terminal
 # grayed background for inactive panes
 set-window-option -g window-style bg="#32302f"
+# ensure "autoread" works in nvim (auto reload files when changed)
+set-option -g focus-events on
+# https://gist.github.com/andersevenrud/015e61af2fd264371032763d4ed965b6
+set -g default-terminal "tmux-256color"
+set -ag terminal-overrides ",xterm-256color:RGB"
 
 # List of plugins
 

.zsh-custom/functions.zsh

@@ -21,6 +21,10 @@ checkcert()
 {
 	openssl s_client -connect "$1":443 2>/dev/null
 }
+pem2crt()
+{
+	openssl x509 -inform PEM -in "$1" -out "${1%.*}.crt"
+}
 
 # works only without tex-ending
 tex2pdf()
@@ -59,6 +63,42 @@ m4a2mp3()
 	done
 }
 
+# Show all blob objects in repo sorted from smalles to largest
+# https://stackoverflow.com/a/42544963
+git-blobs()
+{
+	git rev-list --objects --all --missing=print |
+	  git cat-file --batch-check='%(objecttype) %(objectname) %(objectsize) %(rest)' |
+	  sed -n 's/^blob //p' |
+	  sort --numeric-sort --key=2 |
+	  cut -c 1-12,41- |
+	  $(command -v gnumfmt || echo numfmt) --field=2 --to=iec-i --suffix=B --padding=7 --round=nearest
+}
+
+# Do a short code review via several git commands
+# https://piechowski.io/post/git-commands-before-reading-code/
+git-review()
+{
+	echo "### What Changes the Most (1y ago) ###"
+	git log --format=format: --name-only --since="1 year ago" | sort | uniq -c | sort -nr | head -20
+	echo "\n### Who Built This ###"
+	git --no-pager shortlog -sn --no-merges
+	echo "\n### Where Do Bugs Cluster ###"
+	git log -i -E --grep="fix|bug|broken" --name-only --format='' | sort | uniq -c | sort -nr | head -20
+	echo "\n### Is This Project Accelerating or Dying (commit count per m) ###"
+	git log --format='%ad' --date=format:'%Y-%m' | sort | uniq -c
+	echo "\n### How Often Is the Team Firefighting ###"
+	git log --oneline --since="1 year ago" | grep -iE 'revert|hotfix|emergency|rollback'
+}
+
+sshs()
+{
+	tmprc=$(ssh $1 "mktemp --directory")
+	scp -q $HOME/.zshrc $1:$tmprc
+	ssh -t $1 "export ZDOTDIR=${tmprc}; trap 'rm -rf ${tmprc}' EXIT INT TERM; exec zsh"
+	#ssh $1 "rm -rf ${tmprc}"
+}
+
 # show the current mode:
 #PR_VIMODE="#"
 #function zle-keymap-select

.zshrc

@@ -106,7 +106,7 @@ autoload -U promptinit
 promptinit
 
 export XDG_CONFIG_HOME=$HOME/.config/
-export EDITOR=vim
+export EDITOR=nvim
 
 alias ls='ls --color=always'
 alias grep='grep --color=always'
@@ -114,6 +114,7 @@ alias less='less -R'
 alias dd='dd status=progress oflag=direct'
 alias dotfiles='git --git-dir=$HOME/.dotfiles/ --work-tree=$HOME'
 alias hibernate='sudo systemctl hibernate'
-alias ssh="TERM=linux ssh" # for not complaining urxvt about terminals without TERM set
+#alias ssh="TERM=linux ssh" # for not complaining urxvt about terminals without TERM set
 alias cpup="cp -T $0 ../$0"
 alias pythonweb="python -m SimpleHTTPServer 8090"
+alias sayhi="echo hi"